definition
type: AnnotationProperty

expand assertion to
type: AnnotationProperty

term replaced by
type: AnnotationProperty

never_in_taxon
type: AnnotationProperty
expand assertion to: Class: ?X DisjointWith: RO_0002162 some ?Y
database_cross_reference: RO:0002161
has_obo_namespace: external
id: never_in_taxon
is class level: true
is metadata tag: true
shorthand: never_in_taxon

goantislim grouping
type: AnnotationProperty
comment: Grouping classes that can be excluded
sub property of: subset_property

gocheck do not annotate
type: AnnotationProperty
comment: Term not to be used for direct annotation
sub property of: subset_property

gocheck do not manually annotate
type: AnnotationProperty
comment: Term not to be used for direct manual annotation
sub property of: subset_property

goslim aspergillus
type: AnnotationProperty
comment: Aspergillus GO slim
sub property of: subset_property

goslim candida
type: AnnotationProperty
comment: Candida GO slim
sub property of: subset_property

goslim chembl
type: AnnotationProperty
comment: ChEMBL protein targets summary
sub property of: subset_property

goslim generic
type: AnnotationProperty
comment: Generic GO slim
sub property of: subset_property

goslim goa
type: AnnotationProperty
comment: GOA and proteome slim
sub property of: subset_property

goslim metagenomics
type: AnnotationProperty
comment: Metagenomics GO slim
sub property of: subset_property

goslim pir
type: AnnotationProperty
comment: PIR GO slim
sub property of: subset_property

goslim plant
type: AnnotationProperty
comment: Plant GO slim
sub property of: subset_property

goslim pombe
type: AnnotationProperty
comment: Fission yeast GO slim
sub property of: subset_property

goslim synapse
type: AnnotationProperty
comment: synapse GO slim
sub property of: subset_property

goslim virus
type: AnnotationProperty
comment: Viral GO slim
sub property of: subset_property

goslim yeast
type: AnnotationProperty
comment: Yeast GO slim
sub property of: subset_property

gosubset prok
type: AnnotationProperty
comment: Prokaryotic GO subset
sub property of: subset_property

mf needs review
type: AnnotationProperty
comment: Catalytic activity terms in need of attention
sub property of: subset_property

Systematic synonym
type: AnnotationProperty
has_scope: has_exact_synonym
sub property of: synonym_type_property

termgenie unvetted
type: AnnotationProperty
comment: Terms created by TermGenie that do not follow a template and require additional vetting by editors
sub property of: subset_property

virus checked
type: AnnotationProperty
comment: Viral overhaul terms
sub property of: subset_property

subset_property
type: AnnotationProperty

synonym_type_property
type: AnnotationProperty

consider
type: AnnotationProperty

has_alternative_id
type: AnnotationProperty

has_broad_synonym
type: AnnotationProperty

database_cross_reference
type: AnnotationProperty

has_exact_synonym
type: AnnotationProperty

has_narrow_synonym
type: AnnotationProperty

has_obo_format_version
type: AnnotationProperty

has_obo_namespace
type: AnnotationProperty

has_related_synonym
type: AnnotationProperty

has_scope
type: AnnotationProperty

has_synonym_type
type: AnnotationProperty

in_subset
type: AnnotationProperty

shorthand
type: AnnotationProperty

part of
type: ObjectProperty
inverse of: has_part
type: TransitiveProperty
database_cross_reference: BFO:0000050
has_obo_namespace: external
id: part_of
shorthand: part_of

has_part
type: ObjectProperty
type: TransitiveProperty
database_cross_reference: BFO:0000051
has_obo_namespace: external
id: has_part
shorthand: has_part

occurs in
type: ObjectProperty
property chain axiom: part of
database_cross_reference: BFO:0000066
has_obo_namespace: external
id: occurs_in
shorthand: occurs_in

starts_during
type: ObjectProperty
database_cross_reference: RO:0002091
has_obo_namespace: external
id: starts_during
shorthand: starts_during

happens_during
type: ObjectProperty
sub property of: ends_during
type: TransitiveProperty
database_cross_reference: RO:0002092
has_obo_namespace: external
id: happens_during
shorthand: happens_during

ends_during
type: ObjectProperty
database_cross_reference: RO:0002093
has_obo_namespace: external
id: ends_during
shorthand: ends_during

regulates
type: ObjectProperty
type: TransitiveProperty
property chain axiom: part of
database_cross_reference: RO:0002211
has_obo_namespace: external
id: regulates
shorthand: regulates

negatively regulates
type: ObjectProperty
sub property of: regulates
property chain axiom: part of
database_cross_reference: RO:0002212
has_obo_namespace: external
id: negatively_regulates
shorthand: negatively_regulates

positively regulates
type: ObjectProperty
sub property of: regulates
property chain axiom: negatively regulates
property chain axiom: part of
database_cross_reference: RO:0002213
has_obo_namespace: external
id: positively_regulates
shorthand: positively_regulates

mitotic sister chromatid segregation
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: The cell cycle process in which replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle. Each replicated chromosome, composed of two sister chromatids, aligns at the cell equator, paired with its homologous partner. One homolog of each morphologic type goes into each of the resulting chromosome sets.
has_alternative_id: GO:0016359
has_exact_synonym: mitotic chromosome segregation
has_narrow_synonym: mitotic sister-chromatid adhesion release
has_obo_namespace: biological_process
id: GO:0000070
in_subset: goslim pombe

Axiom
annotated source: mitotic sister chromatid segregation
annotated property: definition
annotated target: The cell cycle process in which replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle. Each replicated chromosome, composed of two sister chromatids, aligns at the cell equator, paired with its homologous partner. One homolog of each morphologic type goes into each of the resulting chromosome sets.
database_cross_reference: GOC:ai
database_cross_reference: GOC:jl

microtubule cytoskeleton organization
type: Class
subclass of: biological_process
definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
has_exact_synonym: microtubule cytoskeleton organisation
has_exact_synonym: microtubule dynamics
has_obo_namespace: biological_process
has_related_synonym: microtubule cytoskeleton organization and biogenesis
id: GO:0000226
in_subset: goslim pombe

Axiom
annotated source: microtubule cytoskeleton organization
annotated property: definition
annotated target: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
database_cross_reference: GOC:mah

Axiom
annotated source: microtubule cytoskeleton organization
annotated property: has_exact_synonym
annotated target: microtubule cytoskeleton organisation
database_cross_reference: GOC:mah

Axiom
annotated source: microtubule cytoskeleton organization
annotated property: has_exact_synonym
annotated target: microtubule dynamics
database_cross_reference: GOC:dph
database_cross_reference: GOC:tb

Axiom
annotated source: microtubule cytoskeleton organization
annotated property: has_related_synonym
annotated target: microtubule cytoskeleton organization and biogenesis
database_cross_reference: GOC:mah

mitotic cytokinesis
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
subclass of: Restriction
  on property: has_part
  some values from: membrane organization
definition: A cell cycle process that results in the division of the cytoplasm of a cell after mitosis, resulting in the separation of the original cell into two daughter cells.
has_exact_synonym: cytokinesis after mitosis
has_obo_namespace: biological_process
id: GO:0000281
in_subset: goslim pombe

Axiom
annotated source: mitotic cytokinesis
annotated property: definition
annotated target: A cell cycle process that results in the division of the cytoplasm of a cell after mitosis, resulting in the separation of the original cell into two daughter cells.
database_cross_reference: GOC:mtg_cell_cycle

conjugation with cellular fusion
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: A conjugation process that results in the union of cellular and genetic information from compatible mating types. An example of this process is found in Saccharomyces cerevisiae.
has_alternative_id: GO:0007322
has_alternative_id: GO:0007333
has_alternative_id: GO:0030461
has_alternative_id: GO:0030477
has_obo_namespace: biological_process
has_related_synonym: cell fusion
has_related_synonym: mating
id: GO:0000747
in_subset: goslim pombe

Axiom
annotated source: conjugation with cellular fusion
annotated property: definition
annotated target: A conjugation process that results in the union of cellular and genetic information from compatible mating types. An example of this process is found in Saccharomyces cerevisiae.
database_cross_reference: GOC:elh

cytoplasmic translation
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: has_part
  some values from: biological_process
definition: The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
created by: hjd
creation date: 2011-06-09T03:11:53Z
has_obo_namespace: biological_process
id: GO:0002181
in_subset: goslim pombe
in_subset: goslim yeast
comment: Note that this term applies to translation performed by cytoplasmic ribosomes, which is distinct from translation performed by organellar ribosomes. For mitochondrial translation, consider GO:0032543 'mitochondrial translation' or its child terms.

Axiom
annotated source: cytoplasmic translation
annotated property: definition
annotated target: The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
database_cross_reference: GOC:hjd

carbohydrate metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
database_cross_reference: Reactome:REACT_102834
database_cross_reference: Reactome:REACT_103806
database_cross_reference: Reactome:REACT_104502
database_cross_reference: Reactome:REACT_105321
database_cross_reference: Reactome:REACT_106046
database_cross_reference: Reactome:REACT_107409
database_cross_reference: Reactome:REACT_115733
database_cross_reference: Reactome:REACT_28218
database_cross_reference: Reactome:REACT_32291
database_cross_reference: Reactome:REACT_33141
database_cross_reference: Reactome:REACT_33953
database_cross_reference: Reactome:REACT_34800
database_cross_reference: Reactome:REACT_474
database_cross_reference: Reactome:REACT_77669
database_cross_reference: Reactome:REACT_81945
database_cross_reference: Reactome:REACT_83038
database_cross_reference: Reactome:REACT_83329
database_cross_reference: Reactome:REACT_88330
database_cross_reference: Reactome:REACT_88558
database_cross_reference: Reactome:REACT_90099
database_cross_reference: Reactome:REACT_96375
database_cross_reference: Reactome:REACT_98394
database_cross_reference: Wikipedia:Carbohydrate_metabolism
has_exact_synonym: carbohydrate metabolism
has_obo_namespace: biological_process
id: GO:0005975
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim plant
in_subset: goslim pombe
in_subset: goslim yeast
in_subset: gosubset prok

Axiom
annotated source: carbohydrate metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
database_cross_reference: GOC:mah
database_cross_reference: ISBN:0198506732

Metabolism of carbohydrates, Mus musculus
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_102834

Metabolism of carbohydrates, Mycobacterium tuberculosis
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_103806

Metabolism of carbohydrates, Gallus gallus
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_104502

Metabolism of carbohydrates, Escherichia coli
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_105321

Metabolism of carbohydrates, Drosophila melanogaster
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_106046

Metabolism of carbohydrates, Caenorhabditis elegans
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_107409

Carbohydrate metabolism, Gallus gallus
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_115733

Metabolism of carbohydrates, Xenopus tropicalis
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_28218

Metabolism of carbohydrates, Staphylococcus aureus N315
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_32291

Metabolism of carbohydrates, Taeniopygia guttata
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_33141

Metabolism of carbohydrates, Rattus norvegicus
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_33953

Metabolism of carbohydrates, Danio rerio
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_34800

Metabolism of carbohydrates, Homo sapiens
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_474

Metabolism of carbohydrates, Plasmodium falciparum
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_77669

Metabolism of carbohydrates, Schizosaccharomyces pombe
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_81945

Metabolism of carbohydrates, Arabidopsis thaliana
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_83038

Metabolism of carbohydrates, Saccharomyces cerevisiae
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_83329

Metabolism of carbohydrates, Bos taurus
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_88330

Metabolism of carbohydrates, Canis familiaris
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_88558

Metabolism of carbohydrates, Sus scrofa
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_90099

Metabolism of carbohydrates, Dictyostelium discoideum
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_96375

Metabolism of carbohydrates, Oryza sativa
type: Axiom
annotated source: carbohydrate metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_98394

generation of precursor metabolites and energy
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.
has_broad_synonym: energy pathways
has_obo_namespace: biological_process
has_related_synonym: intermediary metabolism
has_related_synonym: metabolic energy generation
id: GO:0006091
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim plant
in_subset: goslim pombe
in_subset: goslim yeast
in_subset: gosubset prok

Axiom
annotated source: generation of precursor metabolites and energy
annotated property: definition
annotated target: The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.
database_cross_reference: GOC:jl

Axiom
annotated source: generation of precursor metabolites and energy
annotated property: has_related_synonym
annotated target: intermediary metabolism
database_cross_reference: GOC:mah

DNA replication
type: Class
subclass of: biological_process
definition: The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
has_alternative_id: GO:0055133
database_cross_reference: Reactome:REACT_100559
database_cross_reference: Reactome:REACT_101280
database_cross_reference: Reactome:REACT_101497
database_cross_reference: Reactome:REACT_102679
database_cross_reference: Reactome:REACT_103614
database_cross_reference: Reactome:REACT_104547
database_cross_reference: Reactome:REACT_105292
database_cross_reference: Reactome:REACT_105467
database_cross_reference: Reactome:REACT_105835
database_cross_reference: Reactome:REACT_106018
database_cross_reference: Reactome:REACT_106104
database_cross_reference: Reactome:REACT_106382
database_cross_reference: Reactome:REACT_106434
database_cross_reference: Reactome:REACT_106732
database_cross_reference: Reactome:REACT_107075
database_cross_reference: Reactome:REACT_107423
database_cross_reference: Reactome:REACT_108461
database_cross_reference: Reactome:REACT_108634
database_cross_reference: Reactome:REACT_108739
database_cross_reference: Reactome:REACT_108768
database_cross_reference: Reactome:REACT_108929
database_cross_reference: Reactome:REACT_109137
database_cross_reference: Reactome:REACT_112472
database_cross_reference: Reactome:REACT_113703
database_cross_reference: Reactome:REACT_29423
database_cross_reference: Reactome:REACT_29444
database_cross_reference: Reactome:REACT_29691
database_cross_reference: Reactome:REACT_29764
database_cross_reference: Reactome:REACT_30149
database_cross_reference: Reactome:REACT_31024
database_cross_reference: Reactome:REACT_31919
database_cross_reference: Reactome:REACT_32546
database_cross_reference: Reactome:REACT_32932
database_cross_reference: Reactome:REACT_33572
database_cross_reference: Reactome:REACT_33874
database_cross_reference: Reactome:REACT_50018
database_cross_reference: Reactome:REACT_53588
database_cross_reference: Reactome:REACT_6729
database_cross_reference: Reactome:REACT_6738
database_cross_reference: Reactome:REACT_6750
database_cross_reference: Reactome:REACT_6769
database_cross_reference: Reactome:REACT_6798
database_cross_reference: Reactome:REACT_6869
database_cross_reference: Reactome:REACT_6936
database_cross_reference: Reactome:REACT_6939
database_cross_reference: Reactome:REACT_77532
database_cross_reference: Reactome:REACT_79188
database_cross_reference: Reactome:REACT_79450
database_cross_reference: Reactome:REACT_80432
database_cross_reference: Reactome:REACT_80571
database_cross_reference: Reactome:REACT_80896
database_cross_reference: Reactome:REACT_80988
database_cross_reference: Reactome:REACT_81803
database_cross_reference: Reactome:REACT_83095
database_cross_reference: Reactome:REACT_84829
database_cross_reference: Reactome:REACT_85561
database_cross_reference: Reactome:REACT_86410
database_cross_reference: Reactome:REACT_86739
database_cross_reference: Reactome:REACT_87233
database_cross_reference: Reactome:REACT_87449
database_cross_reference: Reactome:REACT_87590
database_cross_reference: Reactome:REACT_88085
database_cross_reference: Reactome:REACT_88384
database_cross_reference: Reactome:REACT_88529
database_cross_reference: Reactome:REACT_89355
database_cross_reference: Reactome:REACT_89439
database_cross_reference: Reactome:REACT_89725
database_cross_reference: Reactome:REACT_90512
database_cross_reference: Reactome:REACT_90809
database_cross_reference: Reactome:REACT_90838
database_cross_reference: Reactome:REACT_91184
database_cross_reference: Reactome:REACT_91302
database_cross_reference: Reactome:REACT_92527
database_cross_reference: Reactome:REACT_92644
database_cross_reference: Reactome:REACT_92706
database_cross_reference: Reactome:REACT_94983

Activation of ATR in response to replication stress, Dictyostelium discoideum
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_79450

Loading of claspin onto DNA during replication origin firing, Taeniopygia guttata
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_80432

Activation of claspin, Mus musculus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_80571

Recruitment and activation of Chk1, Sus scrofa
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_80896

Loading of claspin onto DNA during replication origin firing, Bos taurus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_80988

Recruitment of Rad17-RFC complex to DNA, Canis familiaris
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_81803

Recruitment of Rad17-RFC complex to DNA, Danio rerio
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_83095

Binding of ATR-ATRIP to the RPA-ssDNA complex, Danio rerio
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_84829

Binding of ATR-ATRIP to the RPA-ssDNA complex, Rattus norvegicus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_85561

Stalling of DNA replication fork and RPA binding, Mus musculus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_86410

Recruitment and activation of Chk1, Rattus norvegicus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_86739

Binding of ATR-ATRIP to the RPA-ssDNA complex, Canis familiaris
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_87233

Recruitment of Rad17-RFC complex to DNA, Rattus norvegicus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_87449

Recruitment of Rad17-RFC complex to DNA, Bos taurus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_87590

Binding of ATR-ATRIP to the RPA-ssDNA complex, Gallus gallus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_88085

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Schizosaccharomyces pombe
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_88384

Activation of claspin, Gallus gallus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_88529

Activation of claspin, Danio rerio
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_89355

Activation of ATR in response to replication stress, Sus scrofa
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_89439

Loading of claspin onto DNA during replication origin firing, Drosophila melanogaster
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_89725

Stalling of DNA replication fork and RPA binding, Bos taurus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_90512

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Danio rerio
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_90809

Recruitment of Rad17-RFC complex to DNA, Taeniopygia guttata
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_90838

Recruitment and activation of Chk1, Danio rerio
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_91184

Activation of ATR in response to replication stress, Canis familiaris
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_91302

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Mus musculus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_92527

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Xenopus tropicalis
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_92644

Stalling of DNA replication fork and RPA binding, Danio rerio
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_92706

Stalling of DNA replication fork and RPA binding, Xenopus tropicalis
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_94983

Activation of ATR in response to replication stress, Taeniopygia guttata
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_95253

Activation of claspin, Taeniopygia guttata
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_95329

Binding of ATR-ATRIP to the RPA-ssDNA complex, Mus musculus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_96115

Recruitment and activation of Chk1, Mus musculus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_96804

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Bos taurus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_96998

Loading of claspin onto DNA during replication origin firing, Gallus gallus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_97204

Activation of ATR in response to replication stress, Caenorhabditis elegans
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_97726

Loading of claspin onto DNA during replication origin firing, Xenopus tropicalis
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_99948

Axiom
annotated source: DNA replication
annotated property: definition
annotated target: The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
database_cross_reference: GOC:mah

Activation of ATR in response to replication stress, Mus musculus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_100559

Activation of claspin, Xenopus tropicalis
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_101280

Activation of claspin, Bos taurus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_101497

Activation of ATR in response to replication stress, Gallus gallus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_102679

Stalling of DNA replication fork and RPA binding, Taeniopygia guttata
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_103614

Recruitment and activation of Chk1, Gallus gallus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_104547

Activation of ATR in response to replication stress, Xenopus tropicalis
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_105292

Loading of claspin onto DNA during replication origin firing, Danio rerio
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_105467

Stalling of DNA replication fork and RPA binding, Gallus gallus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_105835

Recruitment of Rad17-RFC complex to DNA, Gallus gallus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_106018

Binding of ATR-ATRIP to the RPA-ssDNA complex, Bos taurus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_106104

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Drosophila melanogaster
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_106382

Activation of claspin, Canis familiaris
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_106434

Recruitment and activation of Chk1, Canis familiaris
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_106732

Activation of ATR in response to replication stress, Danio rerio
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_107075

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Caenorhabditis elegans
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_107423

Recruitment and activation of Chk1, Bos taurus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_108461

Loading of claspin onto DNA during replication origin firing, Mus musculus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_108634

Binding of ATR-ATRIP to the RPA-ssDNA complex, Xenopus tropicalis
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_108739

Activation of ATR in response to replication stress, Bos taurus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_108768

Activation of ATR in response to replication stress, Drosophila melanogaster
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_108929

Stalling of DNA replication fork and RPA binding, Rattus norvegicus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_109137

Activation of ATR in response to replication stress, Saccharomyces cerevisiae
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_112472

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Gallus gallus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_113703

Activation of ATR in response to replication stress, Schizosaccharomyces pombe
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_29423

Binding of ATR-ATRIP to the RPA-ssDNA complex, Taeniopygia guttata
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_29444

Activation of ATR in response to replication stress, Rattus norvegicus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_29691

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Taeniopygia guttata
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_29764

Activation of claspin, Rattus norvegicus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_30149

Recruitment of Rad17-RFC complex to DNA, Xenopus tropicalis
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_31024

Loading of claspin onto DNA during replication origin firing, Rattus norvegicus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_31919

Recruitment of Rad17-RFC complex to DNA, Mus musculus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_32546

Recruitment and activation of Chk1, Taeniopygia guttata
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_32932

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Dictyostelium discoideum
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_33572

Recruitment and activation of Chk1, Xenopus tropicalis
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_33874

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Rattus norvegicus
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_50018

Loading of claspin onto DNA during replication origin firing, Canis familiaris
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_53588

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Homo sapiens
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_6729

Loading of claspin onto DNA during replication origin firing, Homo sapiens
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_6738

Activation of claspin, Homo sapiens
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_6750

Activation of ATR in response to replication stress, Homo sapiens
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_6769

Recruitment of Rad17-RFC complex to DNA, Homo sapiens
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_6798

Recruitment and activation of Chk1, Homo sapiens
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_6869

Stalling of DNA replication fork and RPA binding, Homo sapiens
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_6936

Binding of ATR-ATRIP to the RPA-ssDNA complex, Homo sapiens
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_6939

Stalling of DNA replication fork and RPA binding, Canis familiaris
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_77532

Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Canis familiaris
type: Axiom
annotated source: DNA replication
annotated property: database_cross_reference
annotated target: Reactome:REACT_79188

DNA repair
type: Class
subclass of: biological_process
definition: The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
database_cross_reference: Reactome:REACT_102034
database_cross_reference: Reactome:REACT_106650
database_cross_reference: Reactome:REACT_107446
database_cross_reference: Reactome:REACT_107692
database_cross_reference: Reactome:REACT_107752
database_cross_reference: Reactome:REACT_108864
database_cross_reference: Reactome:REACT_108881
database_cross_reference: Reactome:REACT_108903
database_cross_reference: Reactome:REACT_109956
database_cross_reference: Reactome:REACT_115642
database_cross_reference: Reactome:REACT_115836
database_cross_reference: Reactome:REACT_127
database_cross_reference: Reactome:REACT_216
database_cross_reference: Reactome:REACT_29531
database_cross_reference: Reactome:REACT_29636
database_cross_reference: Reactome:REACT_78051
database_cross_reference: Reactome:REACT_82907
database_cross_reference: Reactome:REACT_83608
database_cross_reference: Reactome:REACT_83660
database_cross_reference: Reactome:REACT_84835
database_cross_reference: Reactome:REACT_85522
database_cross_reference: Reactome:REACT_86513
database_cross_reference: Reactome:REACT_86902
database_cross_reference: Reactome:REACT_88201
database_cross_reference: Reactome:REACT_88946
database_cross_reference: Reactome:REACT_89524
database_cross_reference: Reactome:REACT_90385
database_cross_reference: Reactome:REACT_90952
database_cross_reference: Reactome:REACT_91094
database_cross_reference: Reactome:REACT_91330
database_cross_reference: Reactome:REACT_91442
database_cross_reference: Reactome:REACT_91576
database_cross_reference: Reactome:REACT_92707
database_cross_reference: Reactome:REACT_93704
database_cross_reference: Reactome:REACT_94204
database_cross_reference: Reactome:REACT_94769
database_cross_reference: Reactome:REACT_95050
database_cross_reference: Reactome:REACT_95158
database_cross_reference: Reactome:REACT_96052
database_cross_reference: Reactome:REACT_96452
database_cross_reference: Reactome:REACT_99277
database_cross_reference: Wikipedia:DNA_repair
has_obo_namespace: biological_process
id: GO:0006281
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim yeast
in_subset: gosubset prok

Axiom
annotated source: DNA repair
annotated property: definition
annotated target: The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
database_cross_reference: PMID:11563486

DNA Repair, Staphylococcus aureus N315
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_102034

DNA Damage Reversal, Taeniopygia guttata
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_106650

DNA Repair, Arabidopsis thaliana
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_107446

DNA Damage Reversal, Gallus gallus
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_107692

DNA Repair, Plasmodium falciparum
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_107752

DNA Damage Reversal, Rattus norvegicus
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_108864

DNA Damage Reversal, Bos taurus
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_108881

DNA Repair, Xenopus tropicalis
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_108903

DNA Repair, Gallus gallus
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_109956

DNA repair, Gallus gallus
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_115642

Fanconi Anemia Pathway in DNA repair, Gallus gallus
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_115836

DNA Damage Reversal, Homo sapiens
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_127

DNA Repair, Homo sapiens
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_216

DNA Damage Reversal, Saccharomyces cerevisiae
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_29531

DNA Damage Reversal, Staphylococcus aureus N315
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_29636

DNA Damage Reversal, Canis familiaris
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_78051

DNA Repair, Oryza sativa
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_82907

DNA Damage Reversal, Caenorhabditis elegans
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_83608

DNA Repair, Escherichia coli
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_83660

DNA Damage Reversal, Dictyostelium discoideum
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_84835

DNA Repair, Mus musculus
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_85522

DNA Repair, Mycobacterium tuberculosis
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_86513

DNA Repair, Danio rerio
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_86902

DNA Repair, Drosophila melanogaster
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_88201

DNA Damage Reversal, Mycobacterium tuberculosis
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_88946

DNA Damage Reversal, Drosophila melanogaster
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_89524

DNA Repair, Canis familiaris
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_90385

DNA Damage Reversal, Arabidopsis thaliana
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_90952

DNA Repair, Rattus norvegicus
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_91094

DNA Repair, Bos taurus
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_91330

DNA Repair, Caenorhabditis elegans
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_91442

DNA Damage Reversal, Oryza sativa
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_91576

DNA Repair, Taeniopygia guttata
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_92707

DNA Repair, Saccharomyces cerevisiae
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_93704

DNA Repair, Sus scrofa
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_94204

DNA Repair, Schizosaccharomyces pombe
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_94769

DNA Damage Reversal, Sus scrofa
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_95050

DNA Damage Reversal, Xenopus tropicalis
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_95158

DNA Repair, Dictyostelium discoideum
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_96052

DNA Damage Reversal, Danio rerio
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_96452

DNA Damage Reversal, Mus musculus
type: Axiom
annotated source: DNA repair
annotated property: database_cross_reference
annotated target: Reactome:REACT_99277

DNA recombination
type: Class
subclass of: biological_process
definition: Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
has_obo_namespace: biological_process
id: GO:0006310
in_subset: goslim pombe
in_subset: goslim yeast
in_subset: gosubset prok

Axiom
annotated source: DNA recombination
annotated property: definition
annotated target: Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
database_cross_reference: ISBN:0198506732

chromatin organization
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
has_exact_synonym: chromatin organisation
has_exact_synonym: establishment or maintenance of chromatin architecture
has_obo_namespace: biological_process
id: GO:0006325
in_subset: goslim pombe
in_subset: goslim yeast

Axiom
annotated source: chromatin organization
annotated property: definition
annotated target: Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
database_cross_reference: GOC:mah

Axiom
annotated source: chromatin organization
annotated property: has_exact_synonym
annotated target: chromatin organisation
database_cross_reference: GOC:mah

Axiom
annotated source: chromatin organization
annotated property: has_exact_synonym
annotated target: establishment or maintenance of chromatin architecture
database_cross_reference: GOC:mah

transcription, DNA-templated
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: The cellular synthesis of RNA on a template of DNA.
has_alternative_id: GO:0006350
has_alternative_id: GO:0061018
has_alternative_id: GO:0061022
has_broad_synonym: cellular transcription
has_broad_synonym: transcription
database_cross_reference: Wikipedia:Transcription_(genetics)
has_exact_synonym: DNA-dependent transcription
has_exact_synonym: cellular transcription, DNA-dependent
has_exact_synonym: transcription, DNA-dependent
has_obo_namespace: biological_process
has_related_synonym: transcription regulator activity
id: GO:0006351
in_subset: goslim aspergillus
in_subset: goslim metagenomics
in_subset: goslim pombe
in_subset: gosubset prok

Axiom
annotated source: transcription, DNA-templated
annotated property: definition
annotated target: The cellular synthesis of RNA on a template of DNA.
database_cross_reference: GOC:jl
database_cross_reference: GOC:txnOH

Axiom
annotated source: transcription, DNA-templated
annotated property: has_exact_synonym
annotated target: transcription, DNA-dependent
database_cross_reference: GOC:txnOH

regulation of transcription, DNA-templated
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: regulates
  some values from: transcription, DNA-templated
definition: Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
has_alternative_id: GO:0032583
has_alternative_id: GO:0045449
has_alternative_id: GO:0061019
has_broad_synonym: transcriptional control
has_exact_synonym: regulation of cellular transcription, DNA-dependent
has_exact_synonym: regulation of transcription, DNA-dependent
has_obo_namespace: biological_process
has_related_synonym: regulation of gene-specific transcription
id: GO:0006355
in_subset: goslim pombe
in_subset: gosubset prok

Axiom
annotated source: regulation of transcription, DNA-templated
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
database_cross_reference: GOC:go_curators
database_cross_reference: GOC:txnOH

Axiom
annotated source: regulation of transcription, DNA-templated
annotated property: has_exact_synonym
annotated target: regulation of transcription, DNA-dependent
database_cross_reference: GOC:txnOH

tRNA metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established.
has_exact_synonym: tRNA metabolism
has_obo_namespace: biological_process
id: GO:0006399
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim pombe
in_subset: gosubset prok

Axiom
annotated source: tRNA metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established.
database_cross_reference: ISBN:0198506732

protein folding
type: Class
subclass of: biological_process
definition: The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
has_alternative_id: GO:0007022
has_alternative_id: GO:0007024
has_alternative_id: GO:0007025
database_cross_reference: Reactome:REACT_100411
database_cross_reference: Reactome:REACT_104912
database_cross_reference: Reactome:REACT_105663
database_cross_reference: Reactome:REACT_106009
database_cross_reference: Reactome:REACT_106427
database_cross_reference: Reactome:REACT_106894
database_cross_reference: Reactome:REACT_106927
database_cross_reference: Reactome:REACT_107029
database_cross_reference: Reactome:REACT_108248
database_cross_reference: Reactome:REACT_109411
database_cross_reference: Reactome:REACT_110417
database_cross_reference: Reactome:REACT_16956
database_cross_reference: Reactome:REACT_17001
database_cross_reference: Reactome:REACT_17004
database_cross_reference: Reactome:REACT_17056
database_cross_reference: Reactome:REACT_23878
database_cross_reference: Reactome:REACT_30906
database_cross_reference: Reactome:REACT_32155
database_cross_reference: Reactome:REACT_32255
database_cross_reference: Reactome:REACT_33395
database_cross_reference: Reactome:REACT_77627
database_cross_reference: Reactome:REACT_77963
database_cross_reference: Reactome:REACT_78530
database_cross_reference: Reactome:REACT_81155
database_cross_reference: Reactome:REACT_83906
database_cross_reference: Reactome:REACT_85492
database_cross_reference: Reactome:REACT_85496
database_cross_reference: Reactome:REACT_86318
database_cross_reference: Reactome:REACT_91676
database_cross_reference: Reactome:REACT_92785
database_cross_reference: Reactome:REACT_92961
database_cross_reference: Reactome:REACT_92981
database_cross_reference: Reactome:REACT_94123
database_cross_reference: Reactome:REACT_94443
database_cross_reference: Reactome:REACT_94772
database_cross_reference: Reactome:REACT_96773
database_cross_reference: Reactome:REACT_97016
database_cross_reference: Reactome:REACT_97220
database_cross_reference: Reactome:REACT_98132
database_cross_reference: Wikipedia:Protein_folding
has_narrow_synonym: alpha-tubulin folding
has_narrow_synonym: beta-tubulin folding
has_narrow_synonym: chaperonin-mediated tubulin folding
has_obo_namespace: biological_process
has_related_synonym: chaperone activity
has_related_synonym: chaperonin ATPase activity
has_related_synonym: co-chaperone activity
has_related_synonym: co-chaperonin activity
has_related_synonym: glycoprotein-specific chaperone activity
has_related_synonym: non-chaperonin molecular chaperone ATPase activity
has_related_synonym: protein complex assembly, multichaperone pathway
id: GO:0006457
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim yeast
in_subset: gosubset prok

Axiom
annotated source: protein folding
annotated property: definition
annotated target: The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
database_cross_reference: GOC:go_curators
database_cross_reference: GOC:rb

Chaperonin-mediated protein folding, Arabidopsis thaliana
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_100411

Chaperonin-mediated protein folding, Caenorhabditis elegans
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_104912

Chaperonin-mediated protein folding, Rattus norvegicus
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_105663

Chaperonin-mediated protein folding, Canis familiaris
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_106009

Chaperonin-mediated protein folding, Mus musculus
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_106427

Formation of tubulin folding intermediates by CCT/TriC, Canis familiaris
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_106894

Chaperonin-mediated protein folding, Drosophila melanogaster
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_106927

Formation of tubulin folding intermediates by CCT/TriC, Drosophila melanogaster
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_107029

Chaperonin-mediated protein folding, Gallus gallus
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_108248

Formation of tubulin folding intermediates by CCT/TriC, Bos taurus
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_109411

Formation of tubulin folding intermediates by CCT/TriC, Rattus norvegicus
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_110417

Formation of tubulin folding intermediates by CCT/TriC, Homo sapiens
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_16956

Formation of tubulin folding intermediates by CCT/TriC, Mus musculus
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_17001

Chaperonin-mediated protein folding, Homo sapiens
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_17004

Cooperation of Prefoldin and TriC/CCT in actin and tubulin folding, Bos taurus
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_17056

N-glycan trimming in the ER and Calnexin/Calreticulin cycle, Homo sapiens
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_23878

Chaperonin-mediated protein folding, Oryza sativa
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_30906

Chaperonin-mediated protein folding, Saccharomyces cerevisiae
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_32155

Chaperonin-mediated protein folding, Schizosaccharomyces pombe
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_32255

Formation of tubulin folding intermediates by CCT/TriC, Mus musculus
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_33395

Chaperonin-mediated protein folding, Plasmodium falciparum
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_77627

Formation of tubulin folding intermediates by CCT/TriC, Saccharomyces cerevisiae
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_77963

Formation of tubulin folding intermediates by CCT/TriC, Gallus gallus
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_78530

Formation of tubulin folding intermediates by CCT/TriC, Caenorhabditis elegans
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_81155

Chaperonin-mediated protein folding, Dictyostelium discoideum
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_83906

Formation of tubulin folding intermediates by CCT/TriC, Sus scrofa
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_85492

Formation of tubulin folding intermediates by CCT/TriC, Plasmodium falciparum
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_85496

Formation of tubulin folding intermediates by CCT/TriC, Arabidopsis thaliana
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_86318

Formation of tubulin folding intermediates by CCT/TriC, Schizosaccharomyces pombe
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_91676

Formation of tubulin folding intermediates by CCT/TriC, Dictyostelium discoideum
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_92785

Chaperonin-mediated protein folding, Xenopus tropicalis
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_92961

Chaperonin-mediated protein folding, Taeniopygia guttata
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_92981

Formation of tubulin folding intermediates by CCT/TriC, Taeniopygia guttata
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_94123

Formation of tubulin folding intermediates by CCT/TriC, Danio rerio
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_94443

Chaperonin-mediated protein folding, Sus scrofa
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_94772

Chaperonin-mediated protein folding, Danio rerio
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_96773

Chaperonin-mediated protein folding, Bos taurus
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_97016

Formation of tubulin folding intermediates by CCT/TriC, Xenopus tropicalis
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_97220

Formation of tubulin folding intermediates by CCT/TriC, Oryza sativa
type: Axiom
annotated source: protein folding
annotated property: database_cross_reference
annotated target: Reactome:REACT_98132

Axiom
annotated source: protein folding
annotated property: has_narrow_synonym
annotated target: alpha-tubulin folding
database_cross_reference: GOC:mah

Axiom
annotated source: protein folding
annotated property: has_narrow_synonym
annotated target: beta-tubulin folding
database_cross_reference: GOC:mah

Axiom
annotated source: protein folding
annotated property: has_narrow_synonym
annotated target: chaperonin-mediated tubulin folding
database_cross_reference: GOC:mah

protein complex assembly
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: The aggregation, arrangement and bonding together of a set of components to form a protein complex.
has_exact_synonym: protein complex formation
has_obo_namespace: biological_process
has_related_synonym: chaperone activity
id: GO:0006461
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim pombe
in_subset: gosubset prok

Axiom
annotated source: protein complex assembly
annotated property: definition
annotated target: The aggregation, arrangement and bonding together of a set of components to form a protein complex.
database_cross_reference: GOC:ai

protein glycosylation
type: Class
subclass of: carbohydrate metabolic process
subclass of: Restriction
  on property: part of
  some values from: carbohydrate derivative metabolic process
definition: A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
has_exact_synonym: protein amino acid glycosylation
has_obo_namespace: biological_process
id: GO:0006486
in_subset: goslim pombe
in_subset: goslim yeast
in_subset: gosubset prok

Axiom
annotated source: protein glycosylation
annotated property: definition
annotated target: A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
database_cross_reference: GOC:curators
database_cross_reference: GOC:pr

Axiom
annotated source: protein glycosylation
annotated property: has_exact_synonym
annotated target: protein amino acid glycosylation
database_cross_reference: GOC:bf

cellular amino acid metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
has_alternative_id: GO:0006519
database_cross_reference: Reactome:REACT_116093
has_exact_synonym: amino acid and derivative metabolism
has_exact_synonym: amino acid metabolic process
has_exact_synonym: cellular amino acid and derivative metabolic process
has_exact_synonym: cellular amino acid metabolism
has_obo_namespace: biological_process
id: GO:0006520
in_subset: goslim aspergillus
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pombe
in_subset: goslim yeast
in_subset: gosubset prok

Axiom
annotated source: cellular amino acid metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
database_cross_reference: CHEBI:33709
database_cross_reference: GOC:curators
database_cross_reference: ISBN:0198506732

Amino acid metabolism, Gallus gallus
type: Axiom
annotated source: cellular amino acid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_116093

Axiom
annotated source: cellular amino acid metabolic process
annotated property: has_exact_synonym
annotated target: amino acid and derivative metabolism
database_cross_reference: GOC:curators

Axiom
annotated source: cellular amino acid metabolic process
annotated property: has_exact_synonym
annotated target: amino acid metabolic process
database_cross_reference: GOC:curators

protein targeting
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
database_cross_reference: Wikipedia:Protein_targeting
has_narrow_synonym: protein sorting along secretory pathway
has_obo_namespace: biological_process
has_related_synonym: nascent polypeptide association
id: GO:0006605
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim pombe
in_subset: goslim yeast
in_subset: gosubset prok
comment: Note that protein targeting encompasses the transport of the protein to the specified location, and may also include additional steps such as protein processing.

Axiom
annotated source: protein targeting
annotated property: definition
annotated target: The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
database_cross_reference: GOC:ma

lipid metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
database_cross_reference: Reactome:REACT_104930
database_cross_reference: Reactome:REACT_107479
database_cross_reference: Reactome:REACT_108775
database_cross_reference: Reactome:REACT_114669
database_cross_reference: Reactome:REACT_115652
database_cross_reference: Reactome:REACT_28745
database_cross_reference: Reactome:REACT_31395
database_cross_reference: Reactome:REACT_32539
database_cross_reference: Reactome:REACT_33836
database_cross_reference: Reactome:REACT_602
database_cross_reference: Reactome:REACT_77176
database_cross_reference: Reactome:REACT_77191
database_cross_reference: Reactome:REACT_79244
database_cross_reference: Reactome:REACT_81778
database_cross_reference: Reactome:REACT_82512
database_cross_reference: Reactome:REACT_82723
database_cross_reference: Reactome:REACT_87884
database_cross_reference: Reactome:REACT_90757
database_cross_reference: Reactome:REACT_94607
database_cross_reference: Reactome:REACT_97906
database_cross_reference: Reactome:REACT_98129
database_cross_reference: Reactome:REACT_99706
database_cross_reference: Wikipedia:Lipid_metabolism
has_exact_synonym: lipid metabolism
has_obo_namespace: biological_process
id: GO:0006629
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim plant
in_subset: goslim pombe
in_subset: goslim yeast
in_subset: gosubset prok

Axiom
annotated source: lipid metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
database_cross_reference: GOC:ma

Lipid digestion, mobilization, and transport, Drosophila melanogaster
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_104930

Lipid digestion, mobilization, and transport, Xenopus tropicalis
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_107479

Lipid digestion, mobilization, and transport, Canis familiaris
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_108775

Lipid digestion, mobilization, and transport, Staphylococcus aureus N315
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_114669

Lipid metabolism, Gallus gallus
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_115652

Lipid digestion, mobilization, and transport, Saccharomyces cerevisiae
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_28745

Lipid digestion, mobilization, and transport, Sus scrofa
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_31395

Lipid digestion, mobilization, and transport, Bos taurus
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_32539

Lipid digestion, mobilization, and transport, Rattus norvegicus
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_33836

Lipid digestion, mobilization, and transport, Homo sapiens
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_602

Lipid digestion, mobilization, and transport, Danio rerio
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_77176

Lipid digestion, mobilization, and transport, Arabidopsis thaliana
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_77191

Lipid digestion, mobilization, and transport, Plasmodium falciparum
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_79244

Lipid digestion, mobilization, and transport, Oryza sativa
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_81778

Lipid digestion, mobilization, and transport, Taeniopygia guttata
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_82512

Lipid digestion, mobilization, and transport, Escherichia coli
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_82723

Lipid digestion, mobilization, and transport, Caenorhabditis elegans
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_87884

Lipid digestion, mobilization, and transport, Mus musculus
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_90757

Lipid digestion, mobilization, and transport, Mycobacterium tuberculosis
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_94607

Lipid digestion, mobilization, and transport, Gallus gallus
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_97906

Lipid digestion, mobilization, and transport, Schizosaccharomyces pombe
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_98129

Lipid digestion, mobilization, and transport, Dictyostelium discoideum
type: Axiom
annotated source: lipid metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_99706

vitamin metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving vitamins. Vitamin is a general term for a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. Vitamins may be water-soluble or fat-soluble and usually serve as components of coenzyme systems.
database_cross_reference: Reactome:REACT_101808
database_cross_reference: Reactome:REACT_101968
database_cross_reference: Reactome:REACT_102472
database_cross_reference: Reactome:REACT_103646
database_cross_reference: Reactome:REACT_104403
database_cross_reference: Reactome:REACT_105907
database_cross_reference: Reactome:REACT_106152
database_cross_reference: Reactome:REACT_108558
database_cross_reference: Reactome:REACT_110948
database_cross_reference: Reactome:REACT_11193
database_cross_reference: Reactome:REACT_13450
database_cross_reference: Reactome:REACT_30091
database_cross_reference: Reactome:REACT_31562
database_cross_reference: Reactome:REACT_33241
database_cross_reference: Reactome:REACT_33738
database_cross_reference: Reactome:REACT_34161
database_cross_reference: Reactome:REACT_34372
database_cross_reference: Reactome:REACT_36524
database_cross_reference: Reactome:REACT_78899
database_cross_reference: Reactome:REACT_79004
database_cross_reference: Reactome:REACT_80415
database_cross_reference: Reactome:REACT_81509
database_cross_reference: Reactome:REACT_82129
database_cross_reference: Reactome:REACT_82903
database_cross_reference: Reactome:REACT_83508
database_cross_reference: Reactome:REACT_84128
database_cross_reference: Reactome:REACT_87513
database_cross_reference: Reactome:REACT_88847
database_cross_reference: Reactome:REACT_88850
database_cross_reference: Reactome:REACT_90099
database_cross_reference: Reactome:REACT_96278
database_cross_reference: Reactome:REACT_96904
database_cross_reference: Reactome:REACT_97734
database_cross_reference: Reactome:REACT_97893
has_exact_synonym: vitamin metabolism
has_obo_namespace: biological_process
id: GO:0006766
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim yeast
in_subset: gosubset prok

Axiom
annotated source: vitamin metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving vitamins. Vitamin is a general term for a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. Vitamins may be water-soluble or fat-soluble and usually serve as components of coenzyme systems.
database_cross_reference: GOC:ai

Metabolism of vitamins and cofactors, Bos taurus
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_101808

Metabolism of vitamins and cofactors, Saccharomyces cerevisiae
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_101968

Vitamins, Xenopus tropicalis
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_102472

Metabolism of vitamins and cofactors, Staphylococcus aureus N315
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_103646

Vitamins, Bos taurus
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_104403

Metabolism of vitamins and cofactors, Danio rerio
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_105907

Metabolism of vitamins and cofactors, Xenopus tropicalis
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_106152

Metabolism of vitamins and cofactors, Rattus norvegicus
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_108558

Metabolism of vitamins and cofactors, Sus scrofa
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_110948

Metabolism of vitamins and cofactors, Homo sapiens
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_11193

Vitamins, Homo sapiens
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_13450

Metabolism of vitamins and cofactors, Oryza sativa
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_30091

Vitamins, Sus scrofa
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_31562

Vitamins, Oryza sativa
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_33241

Metabolism of vitamins and cofactors, Mycobacterium tuberculosis
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_33738

Metabolism of vitamins and cofactors, Mus musculus
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_34161

Vitamins, Taeniopygia guttata
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_34372

Vitamins, Gallus gallus
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_36524

Metabolism of vitamins and cofactors, Caenorhabditis elegans
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_78899

Vitamins, Danio rerio
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_79004

Vitamins, Rattus norvegicus
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_80415

Metabolism of vitamins and cofactors, Gallus gallus
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_81509

Metabolism of vitamins and cofactors, Taeniopygia guttata
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_82129

Vitamins, Canis familiaris
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_82903

Metabolism of vitamins and cofactors, Arabidopsis thaliana
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_83508

Vitamins, Drosophila melanogaster
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_84128

Metabolism of vitamins and cofactors, Schizosaccharomyces pombe
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_87513

Vitamins, Mus musculus
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_88847

Metabolism of vitamins and cofactors, Dictyostelium discoideum
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_88850

Vitamins, Arabidopsis thaliana
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_90099

Metabolism of vitamins and cofactors, Plasmodium falciparum
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_96278

Metabolism of vitamins and cofactors, Drosophila melanogaster
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_96904

Metabolism of vitamins and cofactors, Escherichia coli
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_97734

Metabolism of vitamins and cofactors, Canis familiaris
type: Axiom
annotated source: vitamin metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_97893

nucleocytoplasmic transport
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: The directed movement of molecules between the nucleus and the cytoplasm.
has_alternative_id: GO:0000063
has_narrow_synonym: nucleocytoplasmic shuttling
has_obo_namespace: biological_process
id: GO:0006913
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim pombe
comment: Note that transport through the nuclear pore complex is not transmembrane because the nuclear membrane is a double membrane, and is not traversed.

Axiom
annotated source: nucleocytoplasmic transport
annotated property: definition
annotated target: The directed movement of molecules between the nucleus and the cytoplasm.
database_cross_reference: GOC:go_curators

autophagy
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: has_part
  some values from: biological_process
definition: The process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation.
has_alternative_id: GO:0016238
database_cross_reference: Wikipedia:Autophagy_(cellular)
has_obo_namespace: biological_process
id: GO:0006914
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe

Axiom
annotated source: autophagy
annotated property: definition
annotated target: The process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation.
database_cross_reference: GOC:autophagy
database_cross_reference: ISBN:0198547684
database_cross_reference: PMID:11099404
database_cross_reference: PMID:9412464

mitochondrion organization
type: Class
subclass of: biological_process
definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components.
has_exact_synonym: mitochondria organization
has_exact_synonym: mitochondrion organisation
has_obo_namespace: biological_process
has_related_synonym: mitochondrion organization and biogenesis
id: GO:0007005
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim yeast

Axiom
annotated source: mitochondrion organization
annotated property: definition
annotated target: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components.
database_cross_reference: GOC:dph
database_cross_reference: GOC:jl
database_cross_reference: GOC:mah
database_cross_reference: GOC:sgd_curators
database_cross_reference: PMID:9786946

Axiom
annotated source: mitochondrion organization
annotated property: has_exact_synonym
annotated target: mitochondria organization
database_cross_reference: GOC:mah

Axiom
annotated source: mitochondrion organization
annotated property: has_exact_synonym
annotated target: mitochondrion organisation
database_cross_reference: GOC:mah

Axiom
annotated source: mitochondrion organization
annotated property: has_related_synonym
annotated target: mitochondrion organization and biogenesis
database_cross_reference: GOC:curators

peroxisome organization
type: Class
subclass of: biological_process
definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules.
has_exact_synonym: peroxisome organisation
has_obo_namespace: biological_process
has_related_synonym: peroxisome organization and biogenesis
has_related_synonym: peroxisome-assembly ATPase activity
id: GO:0007031
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim yeast

Axiom
annotated source: peroxisome organization
annotated property: definition
annotated target: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules.
database_cross_reference: GOC:mah

Axiom
annotated source: peroxisome organization
annotated property: has_exact_synonym
annotated target: peroxisome organisation
database_cross_reference: GOC:curators

Axiom
annotated source: peroxisome organization
annotated property: has_related_synonym
annotated target: peroxisome organization and biogenesis
database_cross_reference: GOC:mah

meiotic nuclear division
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: One of the two nuclear divisions that occur as part of the meiotic cell cycle.
has_broad_synonym: meiosis
has_obo_namespace: biological_process
id: GO:0007126
in_subset: goslim pombe

Axiom
annotated source: meiotic nuclear division
annotated property: definition
annotated target: One of the two nuclear divisions that occur as part of the meiotic cell cycle.
database_cross_reference: GOC:dph
database_cross_reference: GOC:mah
database_cross_reference: PMID:9334324

cell adhesion
type: Class
subclass of: biological_process
definition: The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
database_cross_reference: Wikipedia:Cell_adhesion
has_obo_namespace: biological_process
has_related_synonym: cell adhesion molecule activity
id: GO:0007155
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe
in_subset: gosubset prok

Axiom
annotated source: cell adhesion
annotated property: definition
annotated target: The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
database_cross_reference: GOC:hb
database_cross_reference: GOC:pf

establishment or maintenance of cell polarity
type: Class
subclass of: biological_process
definition: Any cellular process that results in the specification, formation or maintenance of anisotropic intracellular organization or cell growth patterns.
has_alternative_id: GO:0030012
has_alternative_id: GO:0030467
has_obo_namespace: biological_process
has_related_synonym: cell polarity
has_related_synonym: establishment and/or maintenance of cell polarity
has_related_synonym: establishment and/or maintenance of cell polarization
id: GO:0007163
in_subset: goslim pombe

Axiom
annotated source: establishment or maintenance of cell polarity
annotated property: definition
annotated target: Any cellular process that results in the specification, formation or maintenance of anisotropic intracellular organization or cell growth patterns.
database_cross_reference: GOC:mah

Axiom
annotated source: establishment or maintenance of cell polarity
annotated property: has_related_synonym
annotated target: cell polarity
database_cross_reference: GOC:mah
database_cross_reference: GOC:vw

biological_process
type: Class
definition: Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
has_alternative_id: GO:0000004
has_alternative_id: GO:0007582
database_cross_reference: Wikipedia:Biological_process
has_exact_synonym: biological process
has_exact_synonym: physiological process
has_obo_namespace: biological_process
id: GO:0008150
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim plant
in_subset: goslim pombe
in_subset: goslim yeast
in_subset: gosubset prok
comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. Note that when this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.

Axiom
annotated source: biological_process
annotated property: definition
annotated target: Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
database_cross_reference: GOC:go_curators
database_cross_reference: GOC:isa_complete

mRNA metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
database_cross_reference: Reactome:REACT_100536
database_cross_reference: Reactome:REACT_107604
database_cross_reference: Reactome:REACT_108700
database_cross_reference: Reactome:REACT_109292
database_cross_reference: Reactome:REACT_109673
database_cross_reference: Reactome:REACT_109919
database_cross_reference: Reactome:REACT_20605
database_cross_reference: Reactome:REACT_28293
database_cross_reference: Reactome:REACT_29287
database_cross_reference: Reactome:REACT_31547
database_cross_reference: Reactome:REACT_32511
database_cross_reference: Reactome:REACT_33798
database_cross_reference: Reactome:REACT_33846
database_cross_reference: Reactome:REACT_34551
database_cross_reference: Reactome:REACT_78090
database_cross_reference: Reactome:REACT_84825
database_cross_reference: Reactome:REACT_87161
database_cross_reference: Reactome:REACT_98319
has_exact_synonym: mRNA metabolism
has_obo_namespace: biological_process
id: GO:0016071
in_subset: goslim pombe
in_subset: gosubset prok

Axiom
annotated source: mRNA metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
database_cross_reference: ISBN:0198506732

Metabolism of mRNA, Dictyostelium discoideum
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_100536

Metabolism of mRNA, Danio rerio
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_107604

Metabolism of mRNA, Rattus norvegicus
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_108700

Metabolism of mRNA, Drosophila melanogaster
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_109292

Metabolism of mRNA, Canis familiaris
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_109673

Metabolism of mRNA, Gallus gallus
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_109919

Metabolism of mRNA, Homo sapiens
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_20605

Metabolism of mRNA, Sus scrofa
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_28293

Metabolism of mRNA, Xenopus tropicalis
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_29287

Metabolism of mRNA, Plasmodium falciparum
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_31547

Metabolism of mRNA, Arabidopsis thaliana
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_32511

Metabolism of mRNA, Bos taurus
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_33798

Metabolism of mRNA, Mus musculus
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_33846

Metabolism of mRNA, Oryza sativa
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_34551

Metabolism of mRNA, Caenorhabditis elegans
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_78090

Metabolism of mRNA, Taeniopygia guttata
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_84825

Metabolism of mRNA, Schizosaccharomyces pombe
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_87161

Metabolism of mRNA, Saccharomyces cerevisiae
type: Axiom
annotated source: mRNA metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_98319

snoRNA metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving snoRNA, small nucleolar RNA, any of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.
has_exact_synonym: snoRNA metabolism
has_obo_namespace: biological_process
id: GO:0016074
in_subset: goslim pombe

Axiom
annotated source: snoRNA metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving snoRNA, small nucleolar RNA, any of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.
database_cross_reference: GOC:krc

vesicle-mediated transport
type: Class
subclass of: biological_process
definition: A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
has_alternative_id: GO:0006899
has_exact_synonym: vesicle transport
has_exact_synonym: vesicular transport
has_narrow_synonym: nonselective vesicle transport
has_obo_namespace: biological_process
has_related_synonym: protein sorting along secretory pathway
has_related_synonym: vesicle trafficking
id: GO:0016192
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe
in_subset: gosubset prok

Axiom
annotated source: vesicle-mediated transport
annotated property: definition
annotated target: A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
database_cross_reference: GOC:ai
database_cross_reference: GOC:mah
database_cross_reference: ISBN:08789310662000

Axiom
annotated source: vesicle-mediated transport
annotated property: has_exact_synonym
annotated target: vesicular transport
database_cross_reference: GOC:mah

signaling
type: Class
subclass of: biological_process
definition: The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered.
creation date: 2010-02-16T09:30:50Z
has_alternative_id: GO:0023046
has_exact_synonym: biological signaling
has_exact_synonym: signaling process
has_exact_synonym: signalling
has_obo_namespace: biological_process
has_related_synonym: signalling process
id: GO:0023052
in_subset: goslim pombe
in_subset: goslim yeast
comment: Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change.

Axiom
annotated source: signaling
annotated property: definition
annotated target: The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered.
database_cross_reference: GOC:mtg_signal
database_cross_reference: GOC:mtg_signaling_feb11
database_cross_reference: GOC:signaling

Axiom
annotated source: signaling
annotated property: has_related_synonym
annotated target: signalling process
database_cross_reference: GOC:mah

actin cytoskeleton organization
type: Class
subclass of: biological_process
definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
has_exact_synonym: actin cytoskeleton organisation
has_obo_namespace: biological_process
has_related_synonym: actin cytoskeleton organization and biogenesis
has_related_synonym: actin modulating activity
id: GO:0030036
in_subset: goslim pombe

Axiom
annotated source: actin cytoskeleton organization
annotated property: definition
annotated target: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
database_cross_reference: GOC:dph
database_cross_reference: GOC:jl
database_cross_reference: GOC:mah

Axiom
annotated source: actin cytoskeleton organization
annotated property: has_exact_synonym
annotated target: actin cytoskeleton organisation
database_cross_reference: GOC:curators

Axiom
annotated source: actin cytoskeleton organization
annotated property: has_related_synonym
annotated target: actin cytoskeleton organization and biogenesis
database_cross_reference: GOC:mah

protein catabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
database_cross_reference: Wikipedia:Protein_catabolism
has_exact_synonym: protein breakdown
has_exact_synonym: protein catabolism
has_exact_synonym: protein degradation
has_obo_namespace: biological_process
has_related_synonym: pheromone catabolic process
has_related_synonym: pheromone catabolism
id: GO:0030163
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim pombe
in_subset: gosubset prok
comment: This term refers to the breakdown of mature proteins. For cleavage events involved in generating a mature protein from a precursor, consider instead the term 'protein maturation ; GO:0051604' and its children.

Axiom
annotated source: protein catabolic process
annotated property: definition
annotated target: The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
database_cross_reference: GOC:mah

ascospore formation
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: The process in which cells that are products of meiosis acquire the specialized features of ascospores. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota).
has_alternative_id: GO:0007151
has_broad_synonym: spore formation
has_broad_synonym: sporulation
has_exact_synonym: ascospore biosynthesis
has_obo_namespace: biological_process
id: GO:0030437
in_subset: goslim pombe
comment: Note that ascospores and asci are separate biological structures. The ascus is the structure that contain the ascospores, but the development of the ascus is a different process than the formation of the ascospores themselves; for instance, some mutations affect sporulation without affecting ascus development. For this reason, GO:0030437 ascospore formation and GO:0075317 ascus development are different terms and are not linked.

Axiom
annotated source: ascospore formation
annotated property: definition
annotated target: The process in which cells that are products of meiosis acquire the specialized features of ascospores. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota).
database_cross_reference: GOC:di
database_cross_reference: GOC:mah
database_cross_reference: GOC:mcc
database_cross_reference: PMID:16339736

telomere organization
type: Class
subclass of: biological_process
definition: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of telomeres, terminal regions of a linear chromosome that include the telomeric DNA repeats and associated proteins.
has_exact_synonym: chromosome organization, telomeric
has_exact_synonym: organization of chromosome, telomeric region
has_exact_synonym: telomere organisation
has_obo_namespace: biological_process
has_related_synonym: telomere organization and biogenesis
id: GO:0032200
in_subset: goslim pombe
in_subset: goslim yeast

Axiom
annotated source: telomere organization
annotated property: definition
annotated target: A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of telomeres, terminal regions of a linear chromosome that include the telomeric DNA repeats and associated proteins.
database_cross_reference: GOC:dph
database_cross_reference: GOC:jl
database_cross_reference: GOC:mah

Axiom
annotated source: telomere organization
annotated property: has_exact_synonym
annotated target: telomere organisation
database_cross_reference: GOC:mah

Axiom
annotated source: telomere organization
annotated property: has_related_synonym
annotated target: telomere organization and biogenesis
database_cross_reference: GOC:mah

ribosome biogenesis
type: Class
subclass of: biological_process
definition: A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
has_alternative_id: GO:0007046
database_cross_reference: Wikipedia:Ribosome_biogenesis
has_exact_synonym: ribosome biogenesis and assembly
has_obo_namespace: biological_process
has_related_synonym: ribosomal chaperone activity
id: GO:0042254
in_subset: goslim aspergillus
in_subset: goslim candida
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe
in_subset: gosubset prok

Axiom
annotated source: ribosome biogenesis
annotated property: definition
annotated target: A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
database_cross_reference: GOC:ma

cofactor metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate.
has_exact_synonym: cofactor metabolism
has_obo_namespace: biological_process
id: GO:0051186
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim yeast
in_subset: gosubset prok

Axiom
annotated source: cofactor metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate.
database_cross_reference: GOC:ai

protein maturation
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: Any process leading to the attainment of the full functional capacity of a protein.
has_obo_namespace: biological_process
id: GO:0051604
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim pir
in_subset: goslim pombe
in_subset: goslim yeast
in_subset: gosubset prok

Axiom
annotated source: protein maturation
annotated property: definition
annotated target: Any process leading to the attainment of the full functional capacity of a protein.
database_cross_reference: GOC:ai

transmembrane transport
type: Class
subclass of: biological_process
definition: The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
database_cross_reference: Reactome:REACT_100480
database_cross_reference: Reactome:REACT_101577
database_cross_reference: Reactome:REACT_101877
database_cross_reference: Reactome:REACT_101975
database_cross_reference: Reactome:REACT_102348
database_cross_reference: Reactome:REACT_102897
database_cross_reference: Reactome:REACT_102974
database_cross_reference: Reactome:REACT_104555
database_cross_reference: Reactome:REACT_108243
database_cross_reference: Reactome:REACT_109832
database_cross_reference: Reactome:REACT_110770
database_cross_reference: Reactome:REACT_114546
database_cross_reference: Reactome:REACT_114763
database_cross_reference: Reactome:REACT_114890
database_cross_reference: Reactome:REACT_115378
database_cross_reference: Reactome:REACT_15480
database_cross_reference: Reactome:REACT_15518
database_cross_reference: Reactome:REACT_19118
database_cross_reference: Reactome:REACT_29093
database_cross_reference: Reactome:REACT_29184
database_cross_reference: Reactome:REACT_29635
database_cross_reference: Reactome:REACT_30969
database_cross_reference: Reactome:REACT_32055
database_cross_reference: Reactome:REACT_32223
database_cross_reference: Reactome:REACT_32423
database_cross_reference: Reactome:REACT_32713
database_cross_reference: Reactome:REACT_33571
database_cross_reference: Reactome:REACT_61245
database_cross_reference: Reactome:REACT_79086
database_cross_reference: Reactome:REACT_79921
database_cross_reference: Reactome:REACT_80022
database_cross_reference: Reactome:REACT_80510
database_cross_reference: Reactome:REACT_80848
database_cross_reference: Reactome:REACT_80977
database_cross_reference: Reactome:REACT_81024
database_cross_reference: Reactome:REACT_81153
database_cross_reference: Reactome:REACT_82725
database_cross_reference: Reactome:REACT_83770
database_cross_reference: Reactome:REACT_86135
database_cross_reference: Reactome:REACT_86409
database_cross_reference: Reactome:REACT_86576
database_cross_reference: Reactome:REACT_87124
database_cross_reference: Reactome:REACT_88059
database_cross_reference: Reactome:REACT_88521
database_cross_reference: Reactome:REACT_88894
database_cross_reference: Reactome:REACT_89376
database_cross_reference: Reactome:REACT_91272
database_cross_reference: Reactome:REACT_91803
database_cross_reference: Reactome:REACT_92006
database_cross_reference: Reactome:REACT_92624
database_cross_reference: Reactome:REACT_93747
database_cross_reference: Reactome:REACT_94160
database_cross_reference: Reactome:REACT_94393
database_cross_reference: Reactome:REACT_94944
database_cross_reference: Reactome:REACT_94972
database_cross_reference: Reactome:REACT_96633
database_cross_reference: Reactome:REACT_96636
database_cross_reference: Reactome:REACT_97365
database_cross_reference: Reactome:REACT_97867
database_cross_reference: Reactome:REACT_98509
database_cross_reference: Reactome:REACT_98716
database_cross_reference: Reactome:REACT_99579
database_cross_reference: Reactome:REACT_99829
has_exact_synonym: membrane transport
has_obo_namespace: biological_process
id: GO:0055085
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim pombe
in_subset: goslim yeast
comment: Transmembrane transport requires transport of a solute across a lipid bilayer. Note that transport through the nuclear pore complex is not transmembrane because the nuclear membrane is a double membrane and is not traversed. For transport through the nuclear pore, consider instead the term 'nucleocytoplasmic transport ; GO:0006913' and its children. Note also that this term is not intended for use in annotating lateral movement within membranes.

Axiom
annotated source: transmembrane transport
annotated property: definition
annotated target: The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
database_cross_reference: GOC:dph
database_cross_reference: GOC:jid

SLC-mediated transmembrane transport, Taeniopygia guttata
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_100480

SLC-mediated transmembrane transport, Caenorhabditis elegans
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_101577

SLC-mediated transmembrane transport, Escherichia coli
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_101877

SLC-mediated transmembrane transport, Sus scrofa
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_101975

Transmembrane transport of small molecules, Staphylococcus aureus N315
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_102348

Transmembrane transport of small molecules, Caenorhabditis elegans
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_102897

SLC-mediated transmembrane transport, Canis familiaris
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_102974

SLC-mediated transmembrane transport, Xenopus tropicalis
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_104555

SLC-mediated transmembrane transport, Staphylococcus aureus N315
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_108243

Transmembrane transport of small molecules, Plasmodium falciparum
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_109832

ABC-family proteins mediated transport, Mus musculus
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_110770

ABC-family proteins mediated transport, Staphylococcus aureus N315
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_114546

ABC-family proteins mediated transport, Escherichia coli
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_114763

ABC-family proteins mediated transport, Plasmodium falciparum
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_114890

ABC-family proteins mediated transport, Mycobacterium tuberculosis
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_115378

ABC-family proteins mediated transport, Homo sapiens
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_15480

Transmembrane transport of small molecules, Homo sapiens
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_15518

SLC-mediated transmembrane transport, Homo sapiens
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_19118

ABC-family proteins mediated transport, Taeniopygia guttata
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_29093

SLC-mediated transmembrane transport, Gallus gallus
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_29184

Transmembrane transport of small molecules, Canis familiaris
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_29635

ABC-family proteins mediated transport, Canis familiaris
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_30969

Transmembrane transport of small molecules, Saccharomyces cerevisiae
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_32055

Transmembrane transport of small molecules, Rattus norvegicus
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_32223

SLC-mediated transmembrane transport, Bos taurus
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_32423

ABC-family proteins mediated transport, Sus scrofa
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_32713

SLC-mediated transmembrane transport, Danio rerio
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_33571

Transmembrane transport of small molecules, Bos taurus
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_61245

SLC-mediated transmembrane transport, Plasmodium falciparum
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_79086

SLC-mediated transmembrane transport, Saccharomyces cerevisiae
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_79921

ABC-family proteins mediated transport, Bos taurus
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_80022

ABC-family proteins mediated transport, Rattus norvegicus
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_80510

ABC-family proteins mediated transport, Schizosaccharomyces pombe
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_80848

ABC-family proteins mediated transport, Caenorhabditis elegans
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_80977

Transmembrane transport of small molecules, Oryza sativa
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_81024

SLC-mediated transmembrane transport, Mus musculus
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_81153

SLC-mediated transmembrane transport, Rattus norvegicus
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_82725

Transmembrane transport of small molecules, Escherichia coli
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_83770

ABC-family proteins mediated transport, Oryza sativa
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_86135

Transmembrane transport of small molecules, Drosophila melanogaster
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_86409

Transmembrane transport of small molecules, Schizosaccharomyces pombe
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_86576

SLC-mediated transmembrane transport, Oryza sativa
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_87124

ABC-family proteins mediated transport, Xenopus tropicalis
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_88059

Transmembrane transport of small molecules, Taeniopygia guttata
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_88521

Transmembrane transport of small molecules, Gallus gallus
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_88894

SLC-mediated transmembrane transport, Schizosaccharomyces pombe
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_89376

ABC-family proteins mediated transport, Arabidopsis thaliana
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_91272

SLC-mediated transmembrane transport, Mycobacterium tuberculosis
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_91803

Transmembrane transport of small molecules, Mycobacterium tuberculosis
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_92006

ABC-family proteins mediated transport, Gallus gallus
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_92624

Transmembrane transport of small molecules, Dictyostelium discoideum
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_93747

Transmembrane transport of small molecules, Mus musculus
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_94160

ABC-family proteins mediated transport, Drosophila melanogaster
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_94393

ABC-family proteins mediated transport, Danio rerio
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_94944

SLC-mediated transmembrane transport, Dictyostelium discoideum
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_94972

Transmembrane transport of small molecules, Sus scrofa
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_96633

SLC-mediated transmembrane transport, Arabidopsis thaliana
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_96636

Transmembrane transport of small molecules, Arabidopsis thaliana
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_97365

ABC-family proteins mediated transport, Saccharomyces cerevisiae
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_97867

Transmembrane transport of small molecules, Xenopus tropicalis
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_98509

SLC-mediated transmembrane transport, Drosophila melanogaster
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_98716

Transmembrane transport of small molecules, Danio rerio
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_99579

ABC-family proteins mediated transport, Dictyostelium discoideum
type: Axiom
annotated source: transmembrane transport
annotated property: database_cross_reference
annotated target: Reactome:REACT_99829

nucleobase-containing small molecule metabolic process
type: Class
subclass of: biological_process
definition: The cellular chemical reactions and pathways involving a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide.
database_cross_reference: Reactome:REACT_100770
database_cross_reference: Reactome:REACT_105851
database_cross_reference: Reactome:REACT_107755
database_cross_reference: Reactome:REACT_107894
database_cross_reference: Reactome:REACT_116039
database_cross_reference: Reactome:REACT_1698
database_cross_reference: Reactome:REACT_28046
database_cross_reference: Reactome:REACT_29205
database_cross_reference: Reactome:REACT_29767
database_cross_reference: Reactome:REACT_31512
database_cross_reference: Reactome:REACT_33967
database_cross_reference: Reactome:REACT_77113
database_cross_reference: Reactome:REACT_78257
database_cross_reference: Reactome:REACT_82673
database_cross_reference: Reactome:REACT_82902
database_cross_reference: Reactome:REACT_82978
database_cross_reference: Reactome:REACT_83845
database_cross_reference: Reactome:REACT_86759
database_cross_reference: Reactome:REACT_90903
database_cross_reference: Reactome:REACT_96600
database_cross_reference: Reactome:REACT_97332
database_cross_reference: Reactome:REACT_99343
has_exact_synonym: nucleobase, nucleoside and nucleotide metabolism
has_obo_namespace: biological_process
has_related_synonym: nucleobase, nucleoside and nucleotide metabolic process
id: GO:0055086
in_subset: goslim pombe
in_subset: goslim yeast
in_subset: gosubset prok

Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: definition
annotated target: The cellular chemical reactions and pathways involving a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide.
database_cross_reference: GOC:vw

Metabolism of nucleotides, Plasmodium falciparum
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_100770

Metabolism of nucleotides, Schizosaccharomyces pombe
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_105851

Metabolism of nucleotides, Mycobacterium tuberculosis
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_107755

Metabolism of nucleotides, Rattus norvegicus
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_107894

Nucleotide metabolism, Gallus gallus
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_116039

Metabolism of nucleotides, Homo sapiens
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_1698

Metabolism of nucleotides, Drosophila melanogaster
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_28046

Metabolism of nucleotides, Dictyostelium discoideum
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_29205

Metabolism of nucleotides, Saccharomyces cerevisiae
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_29767

Metabolism of nucleotides, Sus scrofa
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_31512

Metabolism of nucleotides, Mus musculus
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_33967

Metabolism of nucleotides, Taeniopygia guttata
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_77113

Metabolism of nucleotides, Staphylococcus aureus N315
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_78257

Metabolism of nucleotides, Caenorhabditis elegans
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_82673

Metabolism of nucleotides, Canis familiaris
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_82902

Metabolism of nucleotides, Escherichia coli
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_82978

Metabolism of nucleotides, Bos taurus
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_83845

Metabolism of nucleotides, Oryza sativa
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_86759

Metabolism of nucleotides, Gallus gallus
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_90903

Metabolism of nucleotides, Danio rerio
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_96600

Metabolism of nucleotides, Arabidopsis thaliana
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_97332

Metabolism of nucleotides, Xenopus tropicalis
type: Axiom
annotated source: nucleobase-containing small molecule metabolic process
annotated property: database_cross_reference
annotated target: Reactome:REACT_99343

membrane organization
type: Class
subclass of: biological_process
definition: A process which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
created by: dph
creation date: 2010-02-08T02:43:11Z
has_alternative_id: GO:0016044
database_cross_reference: Reactome:REACT_101524
database_cross_reference: Reactome:REACT_103082
database_cross_reference: Reactome:REACT_11123
database_cross_reference: Reactome:REACT_29278
database_cross_reference: Reactome:REACT_32337
database_cross_reference: Reactome:REACT_33741
database_cross_reference: Reactome:REACT_34084
database_cross_reference: Reactome:REACT_78213
database_cross_reference: Reactome:REACT_78288
database_cross_reference: Reactome:REACT_83546
database_cross_reference: Reactome:REACT_86557
database_cross_reference: Reactome:REACT_87431
database_cross_reference: Reactome:REACT_88307
database_cross_reference: Reactome:REACT_91154
database_cross_reference: Reactome:REACT_93714
database_cross_reference: Reactome:REACT_95586
database_cross_reference: Reactome:REACT_96516
database_cross_reference: Reactome:REACT_97881
has_exact_synonym: cellular membrane organisation
has_exact_synonym: cellular membrane organization
has_exact_synonym: membrane organisation
has_obo_namespace: biological_process
has_related_synonym: membrane organization and biogenesis
id: GO:0061024
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim pombe

Axiom
annotated source: membrane organization
annotated property: definition
annotated target: A process which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
database_cross_reference: GOC:dph
database_cross_reference: GOC:tb

Membrane Trafficking, Dictyostelium discoideum
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_101524

Membrane Trafficking, Schizosaccharomyces pombe
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_103082

Membrane Trafficking, Homo sapiens
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_11123

Membrane Trafficking, Sus scrofa
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_29278

Membrane Trafficking, Taeniopygia guttata
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_32337

Membrane Trafficking, Bos taurus
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_33741

Membrane Trafficking, Caenorhabditis elegans
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_34084

Membrane Trafficking, Plasmodium falciparum
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_78213

Membrane Trafficking, Xenopus tropicalis
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_78288

Membrane Trafficking, Oryza sativa
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_83546

Membrane Trafficking, Arabidopsis thaliana
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_86557

Membrane Trafficking, Drosophila melanogaster
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_87431

Membrane Trafficking, Mus musculus
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_88307

Membrane Trafficking, Saccharomyces cerevisiae
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_91154

Membrane Trafficking, Danio rerio
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_93714

Membrane Trafficking, Gallus gallus
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_95586

Membrane Trafficking, Canis familiaris
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_96516

Membrane Trafficking, Rattus norvegicus
type: Axiom
annotated source: membrane organization
annotated property: database_cross_reference
annotated target: Reactome:REACT_97881

Axiom
annotated source: membrane organization
annotated property: has_exact_synonym
annotated target: cellular membrane organisation
database_cross_reference: GOC:curators

Axiom
annotated source: membrane organization
annotated property: has_exact_synonym
annotated target: membrane organisation
database_cross_reference: GOC:mah

Axiom
annotated source: membrane organization
annotated property: has_related_synonym
annotated target: membrane organization and biogenesis
database_cross_reference: GOC:mah

protein modification by small protein conjugation or removal
type: Class
subclass of: biological_process
definition: A protein modification process in which one or more groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to or removed from a target protein.
created by: midori
creation date: 2009-05-11T02:54:03Z
has_obo_namespace: biological_process
id: GO:0070647
in_subset: goslim pombe
in_subset: goslim yeast

Axiom
annotated source: protein modification by small protein conjugation or removal
annotated property: definition
annotated target: A protein modification process in which one or more groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to or removed from a target protein.
database_cross_reference: GOC:mah

cell wall organization or biogenesis
type: Class
subclass of: biological_process
definition: A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall.
created by: midori
creation date: 2010-01-13T03:19:38Z
has_alternative_id: GO:0070882
has_exact_synonym: cell wall organisation or biogenesis
has_exact_synonym: cell wall organization or biogenesis at cellular level
has_exact_synonym: cellular cell wall organisation or biogenesis
has_exact_synonym: cellular cell wall organization or biogenesis
has_obo_namespace: biological_process
id: GO:0071554
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pombe
in_subset: goslim yeast
in_subset: gosubset prok

Axiom
annotated source: cell wall organization or biogenesis
annotated property: definition
annotated target: A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall.
database_cross_reference: GOC:mah

Axiom
annotated source: cell wall organization or biogenesis
annotated property: has_exact_synonym
annotated target: cell wall organisation or biogenesis
database_cross_reference: GOC:mah

Axiom
annotated source: cell wall organization or biogenesis
annotated property: has_exact_synonym
annotated target: cell wall organization or biogenesis at cellular level
database_cross_reference: GOC:mah

Axiom
annotated source: cell wall organization or biogenesis
annotated property: has_exact_synonym
annotated target: cellular cell wall organisation or biogenesis
database_cross_reference: GOC:mah

nitrogen cycle metabolic process
type: Class
subclass of: biological_process
definition: A nitrogen compound metabolic process that contributes to the nitrogen cycle. The nitrogen cycle is a series of metabolic pathways by which nitrogen is converted between various forms and redox states; it encompasses pathways in which nitrogen is acted upon directly, such as nitrification, denitrification, nitrogen fixation, and mineralization.
created by: midori
creation date: 2010-09-30T05:21:03Z
database_cross_reference: Wikipedia:Nitrogen_cycle
has_obo_namespace: biological_process
id: GO:0071941
in_subset: goslim chembl
in_subset: goslim generic
in_subset: goslim metagenomics
in_subset: goslim pombe

Axiom
annotated source: nitrogen cycle metabolic process
annotated property: definition
annotated target: A nitrogen compound metabolic process that contributes to the nitrogen cycle. The nitrogen cycle is a series of metabolic pathways by which nitrogen is converted between various forms and redox states; it encompasses pathways in which nitrogen is acted upon directly, such as nitrification, denitrification, nitrogen fixation, and mineralization.
database_cross_reference: GOC:mah
database_cross_reference: PMID:16675690
database_cross_reference: Wikipedia:Nitrogen_cycle

detoxification
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: part of
  some values from: biological_process
definition: Any process that reduces or removes the toxicity of a toxic substance. These may include transport of the toxic substance away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance.
has_obo_namespace: biological_process
id: GO:0098754
in_subset: goslim pombe

Axiom
annotated source: detoxification
annotated property: definition
annotated target: Any process that reduces or removes the toxicity of a toxic substance. These may include transport of the toxic substance away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance.
database_cross_reference: GOC:dos

carbohydrate derivative metabolic process
type: Class
subclass of: biological_process
definition: The chemical reactions and pathways involving carbohydrate derivative.
created by: bf
creation date: 2012-07-12T04:05:09Z
has_exact_synonym: carbohydrate derivative metabolism
has_obo_namespace: biological_process
id: GO:1901135
in_subset: goslim pombe

Axiom
annotated source: carbohydrate derivative metabolic process
annotated property: definition
annotated target: The chemical reactions and pathways involving carbohydrate derivative.
database_cross_reference: GOC:TermGenie

Axiom
annotated source: carbohydrate derivative metabolic process
annotated property: has_exact_synonym
annotated target: carbohydrate derivative metabolism
database_cross_reference: GOC:TermGenie

regulation of mitotic cell cycle phase transition
type: Class
subclass of: biological_process
subclass of: Restriction
  on property: regulates
  some values from: biological_process
definition: Any process that modulates the frequency, rate or extent of mitotic cell cycle phase transition.
created by: jl
creation date: 2013-03-19T16:14:38Z
has_exact_synonym: mitotic cell cycle control
has_obo_namespace: biological_process
id: GO:1901990
in_subset: goslim pombe

Axiom
annotated source: regulation of mitotic cell cycle phase transition
annotated property: definition
annotated target: Any process that modulates the frequency, rate or extent of mitotic cell cycle phase transition.
database_cross_reference: GOC:TermGenie
database_cross_reference: GOC:mtg_cell_cycle
database_cross_reference: PMID:22841721

Axiom
annotated source: regulation of mitotic cell cycle phase transition
annotated property: has_exact_synonym
annotated target: mitotic cell cycle control
database_cross_reference: GOC:vw