Gene Ontology Users Meeting Schedule |
Gene Ontology Users Meeting Schedule
La Paloma Resort, Cottonwood Room
Tucson, AZ
February 1, 2002
| 9:00-9:15 | Welcome | |
| 9:15-9:30 |
Michael Ashburner
- Introduction |
|
| 9:30-10:45 |
Development of Ontologies |
|
|
Midori Harris (GO Consortium)
- Development of the Gene Ontologies |
(15') | |
|
P. Leszek Vincent (Maize Mapping Project, POC)
- The Plant OntologyTM Consortium and Plant Ontologies. |
(10') | |
|
Peter E. Midford (University of Arizona)
- Behavior: the ethogram as an ontology |
(10') | |
|
Pankaj Jaiswal (Cornell University)
- Efforts on development and integration of controlled vocabulary at Gramene. |
(10') | |
| Panel Discussion | (30') | |
| 10:45-11:00 | BREAK | |
| 11:00-12:00 |
Ontology Mapping and Applications to the Annotation Pipeline |
|
|
Richard Belew (UCSD)
- Reconciling Hierarchical Taxonomies |
(10') | |
|
Evelyn Camon (SWISS-PROT/TrEMBL/InterPro)
- Integration & Application of GO Annotation at EBI |
(10') | |
|
Michelle Gwinn (TIGR)
- TIGR's use of the GO system - an update |
(10') | |
| Panel Discussion | (30') | |
| 12:00-1:00 | LUNCH | |
| 1:00-2:00 |
The Annotation Pipeline: Use of sequence similarity methods |
|
|
Antonio Planchard (MGI)
- Utilization of orthology relationships in curation |
(10') | |
|
Jed Mathis (RGD)
- Incorporation of GO annotations and future plans for GO within RGD |
(10') | |
|
Matt Berriman (Pathogen Genomes, at Sanger)
- GO for the primary annotation of genome sequencing projects |
(10') | |
| Panel Discussion | (30') | |
| 2:00-2:50 |
The Annotation Trickle: Hand annotation of individual gene products |
|
|
Rebecca Foulger (FlyBase)
- Assigning GO evidence codes in Drosophila |
(10') | |
|
Karen Christie (SGD)
- Curation of GO annotations for Saccharomyces |
(10') | |
| Panel Discussion | (30') | |
| 2:50-3:10 | BREAK | |
| 3:10-4:20 |
Uses of GO and GO Annotations |
|
|
Elizabeth Nickerson (CSHL)
- The Human Genome KnowledgeBase |
(10') | |
|
Scott Doniger (Gladstone Institute, UCSF)
- GenMAPP and Gene Ontology: Developing new tools for the organization and analysis of DNA microarray data |
(10') | |
|
Michael Caudy (Cornell)
- Using Gene Ontology databases for annotating functional DNA sequence motifs revealed by computational genome analysis |
(10') | |
|
Christopher Hogue (Mt. Sinai Hospital Research Institute)
- Large scale use of genome ontology for functional discovery in the Biomolecular Interaction Network Database |
(10') | |
|
Hong Dang (Incellico)
- Evaluation of the accuracy of Gene Ontology (GO) assignments to sequences and integration of GO in a cross-referencing database. |
(10') | |
|
Panel Discussion
|
(30') | |
| 4:30-5:00 | Wrap up and final comments | |
