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GO Annotation File Example
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The file format is (yellow denotes required fields; the rows with
column numbers are not part of the file, but are included here for
convenience in viewing):
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1.
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2.
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3.
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4.
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5.
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6.
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7.
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8.
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9.
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10.
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11.
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12.
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13.
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14.
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15.
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DB
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DB_Object_ID
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DB_Object_Symbol
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NOT
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GOid
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DB:Reference(|DB:Reference)
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Evidence
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With/From
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Aspect
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DB_Object_Name(|Name)
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DB_Object_Synonym(|Synonym)
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DB_Object_Type
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taxon(|taxon)
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Date
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Assigned_by
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For example:
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1.
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2.
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3.
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4.
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5.
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6.
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7.
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8.
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9.
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10.
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11.
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12.
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13.
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14.
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15.
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SGD
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S0000296
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PHO3
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GO:0015888
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SGD_REF:8789|PMID:2676709
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IMP
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P
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acid phosphatase
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YBR092C
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gene
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taxon:4932
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20010118
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SGD
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SGD
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S0000296
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PHO3
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GO:0003993
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SGD_REF:8789|PMID:2676709
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IMP
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F
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acid phosphatase
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YBR092C
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gene
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taxon:4932
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20010118
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SGD
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SGD
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S0005370
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RCL1
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NOT
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GO:0003963
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SGD_REF:641|PMID:10790377
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IDA
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F
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YOL010W
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gene
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taxon:4932
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20020530
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SGD
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SGD
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S0005197
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TEX1
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GO:0006406
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SGD_REF:33394|PMID:11979277
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IC
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GO:0000346
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P
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YNL253W
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gene
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taxon:4932
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20030221
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SGD
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SGD
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S0005316
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ABZ1
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GO:0046820
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SGD_REF:18942|PMID:8346682
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ISS
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CGSC:pabA|CGSC:pabB
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F
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aminodeoxychorismate synthase
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YNR033W
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gene
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taxon:4932
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20030106
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SGD
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The above entries as they appear in the actual file:
SGD S0000296 PHO3 GO:0015888 SGD_REF:8789|PMID:2676709 IMP P acid phosphatase YBR092C gene taxon:4932 20010118 SGD
SGD S0000296 PHO3 GO:0003993 SGD_REF:8789|PMID:2676709 IMP F acid phosphatase YBR092C gene taxon:4932 20010118 SGD
SGD S0005370 RCL1 NOT GO:0003963 SGD_REF:641|PMID:10790377 IDA F YOL010W gene taxon:4932 20020530 SGD
SGD S0005197 TEX1 GO:0006406 SGD_REF:33394|PMID:11979277 IC GO:0000346 P YNL253W gene taxon:4932 20030221 SGD
SGD S0005316 ABZ1 GO:0046820 SGD_REF:18942|PMID:8346682 ISS CGSC:pabA|CGSC:pabB F aminodeoxychorismate synthase YNR033W gene taxon:4932 20030106 SGD
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